Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012534.1_269_360_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

269 - 360

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCTCGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAG

U12 Branch Point Sequence:

CAATTCTGAGCT

Flanking Amino Acid:

RTAPDYFLLQVLLRFRAAEG

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

67.4

0.43

1.5

65.3

43.7

Major PPT

89.1

0.88

0.6

22.4

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

50.6

0.1

1.7

66.78

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011806

Chromosome:

PEDO01012534.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030434

2 - 2222

2221

ENSAPLT00000012281

2 - 2427

2426