About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012534.1_75_123_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
75 - 123
Intron Length:
49

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCGGCTGC
5'SS Class:
major
3'SS Sequence:
TTAATGGGATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATTAACG
Flanking Amino Acid:
GAEALPDTFVRDLMGGGIRG
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.4
55
45.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
53
0.07
1.1
51.9
46.7
Minor 5ss
38.2
-1.3
3.2
50.6
46
Minor BPS
58.4
0.12
1.9
65.95
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011806
Chromosome:
PEDO01012534.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030434
2 - 2222
2221
ENSAPLT00000012281
2 - 2427
2426