Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012534.1_845_944_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

845 - 944

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTGAGCCGG

5'SS Class:

major

3'SS Sequence:

TTTTTGAACCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TGTTTTTGAACC

Flanking Amino Acid:

FANLGEHEFVEEKTKVAKAS

Intron Amino Acid Position:

129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.2

0.26

1.1

44.3

45.2

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

74.5

0.55

67.1

42.9

Minor 5ss

33.1

-1.9

35.1

42.1

Minor BPS

68.1

0.55

1.4

75.57

34.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011806

Chromosome:

PEDO01012534.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012281

2 - 2427

2426