Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012551.1_2481_3812_R

Intron Information:

Intron Rank:

151235

Intron Class:

major

Intron Phase:

Intron Coordinates:

2481 - 3812

Intron Length:

1332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

ATTCACCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAC

U12 Branch Point Sequence:

TGTGCTTTATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

1.2

76.2

39.9

Major BPS

82.3

0.8

83.6

25.8

Major PPT

74.8

0.56

0.9

67.1

34.3

Minor 5ss

31.5

-2.1

2.5

37.7

39.6

Minor BPS

56.6

0.19

1.7

66.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028890

Chromosome:

PEDO01012551.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043290

1791 - 4085

2295