Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012565.1_3253_3552_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3253 - 3552

Intron Length:

300

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

TCCTCCCCACCC

Flanking Amino Acid:

AQCVSYRCSKAALNMLTKCQ

Intron Amino Acid Position:

156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

76.8

31.8

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

83.4

0.75

0.8

77.3

31.4

Minor 5ss

39.1

-1.2

50.2

46.2

Minor BPS

45.8

-0.3

2.1

59.17

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006904

Chromosome:

PEDO01012565.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007185

2920 - 4824

1905