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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012601.1_7060_7256_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7060 - 7256
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TGGGTTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCGCAG
U12 Branch Point Sequence:
CAGGCTCCAGCT
Flanking Amino Acid:
VAEAFAKTGKSIEQLEKEML
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
44.9
-0.3
1.7
57.1
41.8
Major PPT
73
0.52
1
69.2
46.1
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
38.5
-0.7
1.9
49.65
44

Associated Gene:

Gene:
GPD1
Ensembl Gene ID:
ENSAPLG00000021976
Chromosome:
PEDO01012601.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035523
2847 - 9887
7041
ENSAPLT00000034966
4978 - 9887
4910
ENSAPLT00000026579
2847 - 9887
7041
ENSAPLT00000038385
5194 - 9887
4694