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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012601.1_8984_9324_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8984 - 9324
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGAGCA
5'SS Class:
major
3'SS Sequence:
GGTTGTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
ATCTCCGCACCT
Flanking Amino Acid:
KDAIGMSLIKGVDEGPDGLR
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
0.9
66.5
32.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
71.7
0.49
1
61.8
44.4
Minor 5ss
31.4
-2.1
3.2
39
46.3
Minor BPS
46.1
-0.2
2.4
70.25
46.6

Associated Gene:

Gene:
GPD1
Ensembl Gene ID:
ENSAPLG00000021976
Chromosome:
PEDO01012601.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038385
5194 - 9887
4694
ENSAPLT00000035523
2847 - 9887
7041
ENSAPLT00000034966
4978 - 9887
4910
ENSAPLT00000026579
2847 - 9887
7041