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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012606.1_715_1670_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
715 - 1670
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGA
5'SS Class:
major
3'SS Sequence:
TCCCCCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GGATCCTGATGC
Flanking Amino Acid:
LSETLSFPHQSLDDVIKDLM
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.2
42.1
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
68.1
0.41
0.9
60.4
35.3
Minor 5ss
27.5
-2.6
3.6
38.1
46.8
Minor BPS
45.7
-0.3
2
54.08
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007384
Chromosome:
PEDO01012606.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008823
68 - 5279
5212