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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012620.1_142_555_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142 - 555
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTACCTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTTACCTTCAAG
Flanking Amino Acid:
LVLVVVLSVQVFQKAPTPPN
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
69
0.43
1.1
65.4
40.5
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
57.8
0.1
2
69.62
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021672
Chromosome:
PEDO01012620.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014233
75 - 2251
2177