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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012677.1_1613_1700_F

Intron Information:

Intron Rank:
132899
Intron Class:
major
Intron Phase:
Intron Coordinates:
1613 - 1700
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GCCTTGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CAAGCTAAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.2
0.66
0.9
75.9
38
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
38.8
-0.7
2
50.04
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021505
Chromosome:
PEDO01012677.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035929
21 - 2929
2909
ENSAPLT00000021617
619 - 2929
2311