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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012677.1_353_1553_F

Intron Information:

Intron Rank:
132902
Intron Class:
major
Intron Phase:
Intron Coordinates:
353 - 1553
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTGTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.5
0.75
0.8
81
36.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
72.5
0.78
1.3
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021505
Chromosome:
PEDO01012677.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035929
21 - 2929
2909