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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012677.1_900_1553_F

Intron Information:

Intron Rank:
132900
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
900 - 1553
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTAACTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTGTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
65.1
41.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.5
0.75
0.8
81
36.2
Minor 5ss
68.4
0.62
2.1
72.9
38.1
Minor BPS
72.5
0.78
1.3
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021505
Chromosome:
PEDO01012677.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021617
619 - 2929
2311