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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012685.1_684_1057_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
684 - 1057
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGCACGGG
5'SS Class:
weak_major
3'SS Sequence:
CGTTCCTCCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAA
U12 Branch Point Sequence:
CAAATGTTAAGC
Flanking Amino Acid:
APFPGNPRGKRITVVTWNVG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.1
38.8
41.3
Major BPS
63.3
0.33
1.2
55.4
41.7
Major PPT
62.9
0.29
1
60.2
35.7
Minor 5ss
29.1
-2.4
3.5
36.8
47.7
Minor BPS
42.5
-0.5
2.2
48.28
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019186
Chromosome:
PEDO01012685.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020346
592 - 1172
581