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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012705.1_300_2233_F

Intron Information:

Intron Rank:
136446
Intron Class:
major
Intron Phase:
Intron Coordinates:
300 - 2233
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGT
5'SS Class:
major
3'SS Sequence:
GTCCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
ACACATGGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.6
40
Major BPS
61.1
0.28
1
67
29.8
Major PPT
68
0.41
0.8
58.1
33.2
Minor 5ss
25.6
-2.8
3.5
34.5
43.8
Minor BPS
39.4
-0.8
2
45.95
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023515
Chromosome:
PEDO01012705.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025017
21 - 3026
3006