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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012724.1_794_1554_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
794 - 1554
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTCACT
Flanking Amino Acid:
CRRVCGHYTQIVWARSYKVG
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
64.7
0.54
2
86.23
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019827
Chromosome:
PEDO01012724.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019236
173 - 1874
1702