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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012731.1_1178_1341_F

Intron Information:

Intron Rank:
146103
Intron Class:
major
Intron Phase:
Intron Coordinates:
1178 - 1341
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGTG
5'SS Class:
major
3'SS Sequence:
CCGCCCCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAG
U12 Branch Point Sequence:
CCTCGTCTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
63.1
43.4
Major BPS
52.8
0.07
1.7
63.6
42.5
Major PPT
68.5
0.42
0.8
57.9
33.2
Minor 5ss
33.1
-1.9
3.6
45.4
49.7
Minor BPS
40
-0.7
2.2
47.58
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028716
Chromosome:
PEDO01012731.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035666
21 - 2031
2011
ENSAPLT00000031232
21 - 2031
2011
ENSAPLT00000023200
711 - 2031
1321