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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012731.1_1576_1646_F

Intron Information:

Intron Rank:
146111
Intron Class:
major
Intron Phase:
Intron Coordinates:
1576 - 1646
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
CCTCCTTTGAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
76.1
0.59
0.8
75.9
32.7
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
48.7
-0.2
1.7
51.16
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028716
Chromosome:
PEDO01012731.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031232
21 - 2031
2011
ENSAPLT00000035666
21 - 2031
2011