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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012731.1_644_733_F

Intron Information:

Intron Rank:
146107
Intron Class:
major
Intron Phase:
Intron Coordinates:
644 - 733
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGGCACA
5'SS Class:
major
3'SS Sequence:
GTGCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
TTGTCCCCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
58.9
41.8
Major BPS
60.1
0.25
1
51
35.6
Major PPT
65.1
0.34
0.9
54.8
36.5
Minor 5ss
33.3
-1.9
3.1
40.8
45.3
Minor BPS
49.7
0.06
2.2
77.05
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028716
Chromosome:
PEDO01012731.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035666
21 - 2031
2011
ENSAPLT00000031232
21 - 2031
2011
ENSAPLT00000026854
21 - 2031
2011