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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012737.1_236_344_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
236 - 344
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCACCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAG
U12 Branch Point Sequence:
CGCCCCCCACCC
Flanking Amino Acid:
EKPWEYLESAEYQEAYGDKP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
79.5
36.8
Major BPS
49.8
-0
1.7
51.1
46.3
Major PPT
64.8
0.33
0.8
57.2
26.6
Minor 5ss
41.3
-1
3.7
63.6
48.1
Minor BPS
39.9
-0.7
2
45.68
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017721
Chromosome:
PEDO01012737.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035690
21 - 1059
1039