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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012746.1_1299_1638_F

Intron Information:

Intron Rank:
132132
Intron Class:
major
Intron Phase:
Intron Coordinates:
1299 - 1638
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
CCCCCCCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACCCTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
38.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69
0.43
0.7
65.5
23.4
Minor 5ss
34.1
-1.8
3.5
46.6
44.1
Minor BPS
49.5
-0
1.9
61.11
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021010
Chromosome:
PEDO01012746.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025587
21 - 4438
4418