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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012746.1_1548_1638_F

Intron Information:

Intron Rank:
132137
Intron Class:
major
Intron Phase:
Intron Coordinates:
1548 - 1638
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACCCTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69
0.43
0.7
65.5
23.4
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
49.5
-0
1.9
61.11
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021010
Chromosome:
PEDO01012746.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048273
1252 - 4438
3187