Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012747.1_1410_1649_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1410 - 1649

Intron Length:

240

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCGGT

5'SS Class:

major

3'SS Sequence:

TCCTTGGGCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

CGTGGCTGACCC

Flanking Amino Acid:

EDQAFNLSVYESVPNPRTRS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

63.5

42.9

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

65.3

0.34

60.1

40.4

Minor 5ss

33.1

-1.9

3.5

47.2

48.2

Minor BPS

42.1

-0.6

2.1

51.35

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029843

Chromosome:

PEDO01012747.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041536

21 - 2695

2675