Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012768.1_10854_11041_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10854 - 11041

Intron Length:

188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGAGG

5'SS Class:

major

3'SS Sequence:

TCCCCCCCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTGAC

U12 Branch Point Sequence:

GGTGACTGAGCC

Flanking Amino Acid:

KEIGDLMLSRFDGLAKEEIQ

Intron Amino Acid Position:

143

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.1

64.3

47.1

Major BPS

56.2

0.15

1.3

48.8

46.3

Major PPT

70.6

0.46

0.7

61.4

29.1

Minor 5ss

31.2

-2.1

3.1

31.4

42.5

Minor BPS

44.5

-0.4

1.9

54.35

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020571

Chromosome:

PEDO01012768.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032789

2697 - 11383

8687