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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012768.1_3584_3869_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3584 - 3869
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCGC
5'SS Class:
major
3'SS Sequence:
TCTCTCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
CCCTGCTGAGCA
Flanking Amino Acid:
MLRQEEAELQRFYEAYSRNP
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
59.1
42.5
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
82.7
0.74
0.7
80.6
24.6
Minor 5ss
30
-2.3
3.4
42
44.8
Minor BPS
44.1
-0.4
2.1
51.45
46.3

Associated Gene:

Gene:
ARHGEF11
Ensembl Gene ID:
ENSAPLG00000010719
Chromosome:
PEDO01012768.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011175
1249 - 7975
6727
Gene:
Ensembl Gene ID:
ENSAPLG00000020571
Chromosome:
PEDO01012768.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032789
2697 - 11383
8687