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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012768.1_3990_4217_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3990 - 4217

Intron Length:

228

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGGGAA

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGGCAT

U12 Branch Point Sequence:

CATCCCAGCACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

34.4

Major BPS

46.9

-0.1

1.6

57.1

49.4

Major PPT

82.5

0.73

0.7

76.4

25.6

Minor 5ss

28.7

-2.4

3.5

43.2

Minor BPS

43.4

-0.5

2.1

55.24

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020571

Chromosome:

PEDO01012768.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032789

2697 - 11383

8687