Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012768.1_6752_6861_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6752 - 6861

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGCCAC

U12 Branch Point Sequence:

GTGCCACCAGCT

Flanking Amino Acid:

KVSEQLLAEIETRLRNGDDV

Intron Amino Acid Position:

423

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

68.7

38.1

Major BPS

43.9

-0.3

1.4

49.9

45.3

Major PPT

77.9

0.63

0.8

69.5

36.8

Minor 5ss

27.1

-2.6

31.9

42.5

Minor BPS

-0.7

2.1

57.28

44.3

Associated Gene:

Gene:

ARHGEF11

Ensembl Gene ID:

ENSAPLG00000010719

Chromosome:

PEDO01012768.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011175

1249 - 7975

6727

Gene:

Ensembl Gene ID:

ENSAPLG00000020571

Chromosome:

PEDO01012768.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032789

2697 - 11383

8687