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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012768.1_8103_8549_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8103 - 8549
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTGATTTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
57.5
0.23
1.6
69.25
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020571
Chromosome:
PEDO01012768.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032789
2697 - 11383
8687