Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012770.1_4546_4785_F

Intron Information:

Intron Rank:

147780

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4546 - 4785

Intron Length:

240

Sequence Information:

Terminal Dinucleotides:

GC-GG

5'SS Sequence:

AGG|GCTTGGGGG

5'SS Class:

weak_major

3'SS Sequence:

ATGGTGATGGTGG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGTGAT

U12 Branch Point Sequence:

GGCTTGGGGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.7

0.18

1.4

48.9

44.8

Major BPS

66.1

0.4

1.3

57.1

49.4

Major PPT

33.6

-0.9

3.1

40.4

43.3

Minor 5ss

20.3

-3.4

3.9

37.7

Minor BPS

35.4

-1.1

2.4

43.55

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029529

Chromosome:

PEDO01012770.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047892

21 - 5720

5700