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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012809.1_2148_2397_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2148 - 2397
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTGCTCACCA
Flanking Amino Acid:
GLSVYLFRKQAAQRRELEKQ
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
45.6
-0.3
2.2
58.78
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024220
Chromosome:
PEDO01012809.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021597
21 - 4427
4407