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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012809.1_2148_2978_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2148 - 2978
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGCTCTTATTT
Flanking Amino Acid:
GLSVYLFRKQEKQAAELAWR
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
61.4
0.44
1.6
76.67
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024220
Chromosome:
PEDO01012809.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040873
21 - 4427
4407