Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012843.1_95439_164788_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

95439 - 164788

Intron Length:

69350

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAATTGCA

5'SS Class:

major

3'SS Sequence:

AGGATGCAGTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTCAA

U12 Branch Point Sequence:

GCATGAGGAACC

Flanking Amino Acid:

RNKELKEALRMKMFPYMLLK

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

69.9

34.1

Major BPS

61.8

0.29

1.1

63.4

35.6

Major PPT

40.5

-0.5

1.7

36.5

44.7

Minor 5ss

35.5

-1.6

3.2

46.2

42.2

Minor BPS

36.8

-1

2.4

46.01

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029034

Chromosome:

PEDO01012843.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037344

92997 - 164825

71829