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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012854.1_1497_1630_F

Intron Information:

Intron Rank:
129713
Intron Class:
major
Intron Phase:
Intron Coordinates:
1497 - 1630
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGAAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATGTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
83.7
31
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
67.6
0.4
1.1
60.3
44.2
Minor 5ss
21.7
-3.3
3.8
31.8
42.6
Minor BPS
48.2
-0
2
66.72
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019810
Chromosome:
PEDO01012854.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025757
603 - 1986
1384