Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012872.1_3232_4756_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3232 - 4756

Intron Length:

1525

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCCAC

5'SS Class:

major

3'SS Sequence:

CCTCTCTCTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTGAC

U12 Branch Point Sequence:

CTCTCTCTGAAG

Flanking Amino Acid:

THALIRQDPLGKPLLWSPFI

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

1.1

63.2

43.4

Major BPS

51.2

0.03

1.2

44.4

38.7

Major PPT

70.6

0.46

71.1

27.3

Minor 5ss

37.7

-1.4

42.7

44.4

Minor BPS

46.5

-0.4

1.8

51.85

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029307

Chromosome:

PEDO01012872.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047995

2850 - 5425

2576

ENSAPLT00000030959

2850 - 5425

2576