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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012872.1_4936_5101_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4936 - 5101
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
AKMLQLSERQVKTWFQNRRA
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
85.5
0.8
0.9
84.6
36
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029307
Chromosome:
PEDO01012872.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030959
2850 - 5425
2576