Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012879.1_888_997_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

888 - 997

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGCGGG

5'SS Class:

major

3'SS Sequence:

CCCCCCCCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTCTGT

U12 Branch Point Sequence:

TGTCCCCCCCCC

Flanking Amino Acid:

GCGSICITQEVMACGRPQGT

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.1

54.2

Major BPS

24.3

-1.6

4.1

46.4

46.5

Major PPT

66.9

0.38

0.7

57.1

27.1

Minor 5ss

29.2

-2.4

3.4

37.8

Minor BPS

31.1

-1.5

3.6

53.98

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018644

Chromosome:

PEDO01012879.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042728

21 - 1711

1691

ENSAPLT00000037839

21 - 1711

1691