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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012882.1_1283_1361_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1283 - 1361
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
CCTCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGGAT
U12 Branch Point Sequence:
CCCCGCTGAGCG
Flanking Amino Acid:
VLINKDIRCKDDEFTHLYTL
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
46.5
-0.2
1.6
42.8
49.4
Major PPT
71.8
0.49
0.7
65.2
23.5
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
39.2
-0.9
2
37.08
45

Associated Gene:

Gene:
CALR
Ensembl Gene ID:
ENSAPLG00000019978
Chromosome:
PEDO01012882.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024681
21 - 3401
3381
ENSAPLT00000030935
21 - 3401
3381
ENSAPLT00000024504
21 - 3401
3381
ENSAPLT00000030924
21 - 3401
3381
ENSAPLT00000025389
21 - 3401
3381