Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012882.1_1774_2103_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1774 - 2103

Intron Length:

330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAAGCCT

5'SS Class:

major

3'SS Sequence:

TGCTCTGCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAG

U12 Branch Point Sequence:

TCCCGCTGAGCC

Flanking Amino Acid:

PPVIQNPEYKVKSGTIFDNF

Intron Amino Acid Position:

390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

65.5

Major BPS

-0.2

1.6

40.4

42.3

Major PPT

65.9

0.36

0.9

57.9

38.5

Minor 5ss

27.3

-2.6

3.3

39.3

46.1

Minor BPS

43.6

-0.5

52.44

44.7

Associated Gene:

Gene:

CALR

Ensembl Gene ID:

ENSAPLG00000019978

Chromosome:

PEDO01012882.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024681

21 - 3401

3381