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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012882.1_2001_2333_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2001 - 2333
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGGA
5'SS Class:
major
3'SS Sequence:
CCGTGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTGGC
U12 Branch Point Sequence:
TTGGCCGTGCCC
Flanking Amino Acid:
FGVIGLDLWQEAERKMKEAQ
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
62.1
38.7
Major BPS
22.3
-1.7
4
36.7
42.3
Major PPT
65.2
0.34
0.9
57.7
33.3
Minor 5ss
23
-3.1
3.3
29.2
43.4
Minor BPS
37.2
-1
3.7
60.91
45.2

Associated Gene:

Gene:
CALR
Ensembl Gene ID:
ENSAPLG00000019978
Chromosome:
PEDO01012882.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030924
21 - 3401
3381