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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012882.1_767_896_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
767 - 896
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
GTTGCCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAA
U12 Branch Point Sequence:
GTTGCCCTGACA
Flanking Amino Acid:
KFYGDAEKDKGIQTSQDARF
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
49.7
-0
1.3
43.1
41.8
Major PPT
67.4
0.39
1
61.5
40.1
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
59.1
0.28
1.8
72.29
39.4

Associated Gene:

Gene:
CALR
Ensembl Gene ID:
ENSAPLG00000019978
Chromosome:
PEDO01012882.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030924
21 - 3401
3381
ENSAPLT00000025389
21 - 3401
3381
ENSAPLT00000024681
21 - 3401
3381
ENSAPLT00000024504
21 - 3401
3381
ENSAPLT00000030935
21 - 3401
3381