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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012965.1_1212_1348_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
1212 - 1348
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
GCA|ATATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TGACCCGCCACAC|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
TGCTCCTTGACC
Flanking Amino Acid:
RLLTEDPANQHAAYVTCQDL
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
30.5
-1.2
3.3
41.7
40.5
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
36.8
-0.7
3.1
45.9
36.4
Minor 5ss
91.9
1.4
0.9
87.7
23.4
Minor BPS
78.4
0.88
1.1
78.78
36.9

Associated Gene:

Gene:
E2F1
Ensembl Gene ID:
ENSAPLG00000012150
Chromosome:
PEDO01012965.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012654
21 - 3005
2985