Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012974.1_496_595_F

Intron Information:

Intron Rank:

149940

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

496 - 595

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAGCCCCC

5'SS Class:

weak_major

3'SS Sequence:

GTTCTTCCTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCACAA

U12 Branch Point Sequence:

TCGCTCACAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.3

0.1

1.3

43.4

42.6

Major BPS

56.2

0.15

64.6

32.2

Major PPT

82.5

0.73

0.8

73.9

36.8

Minor 5ss

43.8

-0.7

3.2

60.7

Minor BPS

42.6

-0.4

57.95

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030659

Chromosome:

PEDO01012974.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041724

21 - 1192

1172