Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012975.1_10044_10473_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10044 - 10473

Intron Length:

430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCTCCC

5'SS Class:

major

3'SS Sequence:

TGTCACCCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAC

U12 Branch Point Sequence:

CCTCGCTGAGCT

Flanking Amino Acid:

AAAESSSTPQDDVPAEPSRR

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.2

60.8

44.2

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

70.8

0.47

0.9

66.5

35.3

Minor 5ss

-1.1

54.6

42.5

Minor BPS

44.8

-0.3

2.1

62.08

47.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028128

Chromosome:

PEDO01012975.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043713

3079 - 13535

10457

ENSAPLT00000023845

5662 - 13535

7874