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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012975.1_6855_7513_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6855 - 7513
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTC
5'SS Class:
major
3'SS Sequence:
TTTCTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTCTCATTT
Flanking Amino Acid:
PNFGTFHCAVRDFDSLSKEN
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.3
37.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
39.7
-1.2
3
52.8
44.4
Minor BPS
50.2
0.08
1.8
68.21
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028128
Chromosome:
PEDO01012975.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023845
5662 - 13535
7874