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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012976.1_16932_22256_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16932 - 22256
Intron Length:
5325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGGAA
U12 Branch Point Sequence:
TCTGTCTTTACA
Flanking Amino Acid:
QSIPGEKARKVMNDIITTMF
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
48.8
-0
1.5
49.1
46.3
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
60.1
0.31
1.8
70.34
42.1

Associated Gene:

Gene:
OSCP1
Ensembl Gene ID:
ENSAPLG00000008275
Chromosome:
PEDO01012976.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031173
16820 - 28467
11648
ENSAPLT00000021016
16820 - 28277
11458