Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012976.1_23880_24497_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23880 - 24497

Intron Length:

618

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAATC

5'SS Class:

strong_major

3'SS Sequence:

TATTCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAA

U12 Branch Point Sequence:

TTTAACTGATTT

Flanking Amino Acid:

LLFFQDMHIRVSIFLKDKVQ

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

35.3

Major BPS

79.5

0.73

0.9

36.9

Major PPT

89.5

0.89

0.7

84.7

29.6

Minor 5ss

37.6

-1.4

44.8

42.9

Minor BPS

49.6

0.05

1.9

74.98

41.5

Associated Gene:

Gene:

OSCP1

Ensembl Gene ID:

ENSAPLG00000008275

Chromosome:

PEDO01012976.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031173

16820 - 28467

11648

ENSAPLT00000021016

16820 - 28277

11458

ENSAPLT00000008626

22133 - 27701

5569