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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012976.1_24602_24964_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24602 - 24964
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GTTTCAATAATG
Flanking Amino Acid:
PWGTEVPGLIRMYNRNGDEV
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
28.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
71.8
0.49
1.1
74.9
39
Minor 5ss
36.7
-1.5
3
50.4
46
Minor BPS
55.1
0.02
2
66.74
40.6

Associated Gene:

Gene:
OSCP1
Ensembl Gene ID:
ENSAPLG00000008275
Chromosome:
PEDO01012976.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008626
22133 - 27701
5569
ENSAPLT00000031173
16820 - 28467
11648
ENSAPLT00000021016
16820 - 28277
11458