Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012976.1_27152_27584_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27152 - 27584

Intron Length:

433

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTACA

5'SS Class:

strong_major

3'SS Sequence:

GTCCCCTACGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAC

U12 Branch Point Sequence:

AGTTCCCGACCC

Flanking Amino Acid:

YKVVNIEATQDPGLRAELAR

Intron Amino Acid Position:

311

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

80.9

33.4

Major BPS

59.7

0.24

1.1

61.2

32.6

Major PPT

67.3

0.39

0.9

61.5

33.9

Minor 5ss

34.9

-1.7

2.8

43.6

43.5

Minor BPS

47.6

-0.2

63.71

41.1

Associated Gene:

Gene:

OSCP1

Ensembl Gene ID:

ENSAPLG00000008275

Chromosome:

PEDO01012976.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031173

16820 - 28467

11648

ENSAPLT00000008626

22133 - 27701

5569