Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012976.1_3417_3534_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3417 - 3534

Intron Length:

118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGCCCT

5'SS Class:

major

3'SS Sequence:

CTCCCCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAG

U12 Branch Point Sequence:

GCCCCCTGAGCC

Flanking Amino Acid:

LPTSVVLKCSTSRAPAVTGC

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.3

66.3

45.2

Major BPS

-0.1

1.5

42.6

40.4

Major PPT

0.59

0.7

69.2

24.6

Minor 5ss

41.9

-0.9

3.1

57.3

40.2

Minor BPS

47.7

-0.1

1.7

53.68

43.6

Associated Gene:

Gene:

CSF3R

Ensembl Gene ID:

ENSAPLG00000007972

Chromosome:

PEDO01012976.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028977

2027 - 8353

6327

ENSAPLT00000026340

2228 - 8353

6126

ENSAPLT00000025050

1656 - 8479

6824

ENSAPLT00000008291

1656 - 8353

6698