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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012976.1_36787_37624_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36787 - 37624
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
AATCTCCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATCTCCTTACAG
Flanking Amino Acid:
KEYANVPIINSVDDVVKRLL
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.4
0.62
0.9
69.7
35.8
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
57.6
0.1
1.8
62.9
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008180
Chromosome:
PEDO01012976.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008486
32582 - 38007
5426