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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012977.1_776_1001_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
776 - 1001
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GCCTGATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TCTGCCTGATTT
Flanking Amino Acid:
LVVINTKAEQDFLYKEIGRQ
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
71.9
0.49
1
61.3
43.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
52.9
0.17
1.9
72.32
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021171
Chromosome:
PEDO01012977.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033704
397 - 2013
1617